STANFORD Genovo
  Metagenomic de novo Sequencing

Updates

  • 07/14/09: Version 0.1 binaries released.
  • 10/05/09: Paper submitted to RECOMB 2010.
  • 10/05/09: Version 0.2 binaries released.
  • 12/09/09: Paper accepted to RECOMB 2010.
  • 04/20/10: Version 0.3 binaries released.
  • 07/11/10: Version 0.4 binaries and code released.

    • Files

    binaries

    instructions: download .tgz file. tar -xzvf file.tgz to unpack. Read MANUAL and/or run DEMO.sh.
  • genovo_binaries_0.1.tgz - binaries for linux 64 bit machines
  • genovo_binaries_0.2.tgz - binaries for linux 64 bit machines
  • genovo_binaries_0.3.tar.gz - binaries for linux 64 bit machines
  • genovo_binaries_0.4.tar.gz - code and binaries for linux 64 bit machines

    • Frequently Asked Questions

  • The manual can be read here.
  • Algorithm cannon handle reads with length>1000.

    • Authors

  • Jonathan Laserson (joni at cs stanford edu)
  • Vladimir Jojic (vjojic at cs stanford edu)
  • Daphne Koller (koller at cs stanford edu)